miRBase entry: ssc-mir-7138

Stem-loop ssc-mir-7138


Accession
MI0023571
Description
Sus scrofa ssc-mir-7138 precursor miRNA

Literature search
1 open access papers mention ssc-mir-7138
(2 sentences)

Sequence

UCCCAGCAAGUGUCCAUCCAUCUcuguguccauaagaGAGGACUGGCCUUGCAGGGUGC
.(((.(((((.(.((((((.(((((.........)))))))).))))))))).)))...

Structure
--U   A     U U   -   A     gug 
   CCC GCAAG G CCA UCC UCUcu   u
   ||| ||||| | ||| ||| |||||   c
   GGG CGUUC C GGU AGG AGaga   c
CGU   A     - -   C   -     aua 


Annotation confidence Not enough data
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Genome context
chr2: 82423677-82423735 [-]

Database links

Mature ssc-miR-7138-5p

Accession MIMAT0028151
Description Sus scrofa ssc-miR-7138-5p mature miRNA
Sequence 1 - UCCCAGCAAGUGUCCAUCCAUCU - 23
Evidence experimental
Illumina [1]

Mature ssc-miR-7138-3p

Accession MIMAT0028152
Description Sus scrofa ssc-miR-7138-3p mature miRNA
Sequence 38 - GAGGACUGGCCUUGCAGGGUGC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22953717
    Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae
    Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M
    BMC Genomics (2012) 13:459