Stem-loop sequence ssc-mir-7140

Accession

MI0023573 (change log)

Description

Sus scrofa miR-7140 stem-loop

Literature search

1 open access papers mention ssc-mir-7140
(2 sentences)

Stem-loop

   ---      a                uucau 
5'    caacuc agggggcaucauucac     a
      |||||| ||||||||||||||||      
3'    guugag uuccccguaguaagug     g
   cga      a                ucucu 

Deep sequencing

7 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Sscrofa10.2; GCA_000003025.4)	Overlapping transcripts
chr17: 39852404-39852464 [+]	antisense ENSSSCT00000007657 ; intron 1 ENSSSCT00000030637 ; intron 2
chr17: 40148186-40148246 [+]	antisense ENSSSCT00000007657 ; intron 1 ENSSSCT00000030637 ; intron 2
chrUScaf1324: 126746-126806 [+]	antisense ENSSSCT00000007657 ; intron 1 ENSSSCT00000030637 ; intron 2

Database links

• miRBase Tracker:MI0023573

Mature sequence ssc-miR-7140-5p

• Accession: MIMAT0028155
• Sequence: 1 - caacucaagggggcaucauuca - 22
• Evidence: experimental; Illumina [1]

Mature sequence ssc-miR-7140-3p

• Accession: MIMAT0028156
• Sequence: 40 - augaugccccuuagaguugagc - 61
• Deep sequencing: 7 reads, 3 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22953717 "Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae" Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M BMC Genomics. 13:459(2012).