Stem-loop sequence hcmv-mir-US29

Accession

MI0023579 (change log)

Description

Human cytomegalovirus miR-US29 stem-loop

Stem-loop

   u    u    a               ac    g uu 
5'  cacg uugg ugugcucggaccgug  ggug g  u
    |||| |||| |||||||||||||||  |||| |   
3'  gugc aacu acacgggccuggcac  ccgc c  c
   g    c    a               --    g ug 

Confidence

Annotation confidence: not enough data

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Comments

Stark et al. named this sequence mir-US33as in [1].

Genome context

• Coordinates (EMBL:X17403.1): HEHCMVCG: 220469-220540 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hcmv-mir-US29

• hcmv-mir-US25-1: HEHCMVCG: 215245-215314 [-]
• hcmv-mir-US25-2: HEHCMVCG: 215447-215536 [-]
• hcmv-mir-US29: HEHCMVCG: 220469-220540 [+]
• hcmv-mir-US33: HEHCMVCG: 220470-220539 [-]

Database links

• miRBase Tracker:MI0023579

Mature sequence hcmv-miR-US29-5p

• Accession: MIMAT0028167
• Sequence: 8 - uggaugugcucggaccgugacg - 29
• Evidence: experimental; Illumina [1]

Mature sequence hcmv-miR-US29-3p

• Accession: MIMAT0028168
• Sequence: 45 - cccacgguccgggcacaauca - 65
• Evidence: experimental; Illumina [1]

References

1. PMID:22013051 "High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection" Stark TJ, Arnold JD, Spector DH, Yeo GW J Virol. 86:226-235(2012).