miRBase entry: dre-mir-7146

Stem-loop dre-mir-7146


Accession
MI0023605
Description
Danio rerio dre-mir-7146 precursor miRNA

Literature search
2 open access papers mention dre-mir-7146
(2 sentences)

Sequence

217 reads, 23 reads per million, 11 experiments
gacagaaaaagagauauuuugaaaaauguuguaagccgGUAACCAUUGACCUCCAUAGUauuuguuuucccuguuaUGAAGGUCAAUGGUUACCAGUUuucagcuuucuucugaacaucaucuuuuuuguu
(((((((((.(((((.(((.(((.((.((((.((((.(((((((((((((((.(((((((...........))))))).))))))))))))))).)))).)))).)).))).))).))).)))))))))))

Structure
         a  -   a   u   a  u    u    c               C       uuug 
gacagaaaa ga gau uuu gaa aa guug aagc gGUAACCAUUGACCU CAUAGUa    u
||||||||| || ||| ||| ||| || |||| |||| ||||||||||||||| |||||||    u
uuguuuuuu cu cua aag cuu uu cgac uUUG CCAUUGGUAACUGGA GUauugu    u
         -  a   c   u   c  u    u    A               A       cccu 


Annotation confidence Not enough data
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Genome context
chr20: 5074924-5075054 [+]

Database links

Mature dre-miR-7146-5p

Accession MIMAT0028203
Description Danio rerio dre-miR-7146-5p mature miRNA
Sequence 39 - GUAACCAUUGACCUCCAUAGU - 59
Evidence experimental
Illumina [1]

Mature dre-miR-7146-3p

Accession MIMAT0028204
Description Danio rerio dre-miR-7146-3p mature miRNA
Sequence 77 - UGAAGGUCAAUGGUUACCAGUU - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22408181
    Transcriptome-wide analysis of small RNA expression in early zebrafish development
    "Wei C, Salichos L, Wittgrove CM, Rokas A, Patton JG"
    "RNA (2012) 18:915-929