Stem-loop sequence mdo-mir-9a-3

Accession

MI0023762 (change log)

Description

Monodelphis domestica miR-9a-3 stem-loop

Gene family

MIPF0000014; mir-9

Stem-loop

   --uc               g      u  ug 
5'     uuugguuaucuagcu uaugag gg  u
       ||||||||||||||| |||||| ||  c
3'     aagccaauagaucga auacuu cu  g
   auga               a      -  ga 

Deep sequencing

2375941 reads, 3.39e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr2: 191328853-191328914 [-]
• Overlapping transcripts:

  sense

  ENSMODT00000040409 ; mdo-mir-9a-3-201; exon 1

Clustered miRNAs

< 10kb from mdo-mir-9a-3

• mdo-mir-9c-1: chr2: 191328857-191328914 [+]
• mdo-mir-9a-3: chr2: 191328853-191328914 [-]

Database links

• miRBase Tracker:MI0023762

Mature sequence mdo-miR-9a-5p

• Accession: MIMAT0004087
• Previous IDs: mdo-miR-9
• Sequence: 1 - ucuuugguuaucuagcuguauga - 23
• Deep sequencing: 6991910 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004208C5_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-9a-5p

Mature sequence mdo-miR-9a-3p

• Accession: MIMAT0004088
• Previous IDs: mdo-miR-9*
• Sequence: 40 - auaaagcuagauaaccgaaagu - 61
• Deep sequencing: 145444 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003496BE_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-9a-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).