Stem-loop mdo-mir-1643a

Accession

MI0023820

Description

Monodelphis domestica mdo-mir-1643a precursor miRNA

Sequence

3329 reads, 60 reads per million, 5 experiments

AUCCUCACUGAGGGCACUUUUUggauguuggcacaaaAAAGGGCUUCUGGUGAGGGUGG
(((((((((((((.(..((((((..........))))))..).)))).)))))))))..

Structure

--         -    G AC      gaug 
  AUCCUCACU GAGG C  UUUUUg    u
  ||||||||| |||| |  ||||||     
  UGGGAGUGG CUUC G  AAaaac    u
GG         U    G GA      acgg 

Annotation confidence Not enough data

Genome context

chr4: 400890413-400890471 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from mdo-mir-1643a

Mature mdo-miR-1643a-5p

• Accession: MIMAT0028594
• Description: Monodelphis domestica mdo-miR-1643a-5p mature miRNA
• Sequence: 1 - AUCCUCACUGAGGGCACUUUUU - 22
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-1643a-3p

• Accession: MIMAT0028595
• Description: Monodelphis domestica mdo-miR-1643a-3p mature miRNA
• Sequence: 38 - AAAGGGCUUCUGGUGAGGGUGG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45