miRBase entry: mdo-mir-18b

Stem-loop mdo-mir-18b


Accession
MI0023939
Description
Monodelphis domestica mdo-mir-18b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

1223 reads, 56 reads per million, 5 experiments
UAAGGUGCAUCUAGUGCAGUUAGugauguaguuuaguaucUACUGCCCUAAAUGCUCCUUCCGGC
.((((.((((.(((.(((((.((..((........))..))))))).))).)))).)))).....

Structure
----U    U    C   U     U  ug  gua 
     AAGG GCAU UAG GCAGU AG  au   g
     |||| |||| ||| ||||| ||  ||    
     UUCC CGUA AUC CGUCA Uc  ug   u
CGGCC    U    A   C     -  ua  auu 


Annotation confidence Not enough data
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Genome context
chrX: 35202855-35202919 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mdo-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-18b-5p

Accession MIMAT0028766
Description Monodelphis domestica mdo-miR-18b-5p mature miRNA
Sequence 1 - UAAGGUGCAUCUAGUGCAGUUAG - 23
Evidence experimental
Illumina [1]

Mature mdo-miR-18b-3p

Accession MIMAT0028767
Description Monodelphis domestica mdo-miR-18b-3p mature miRNA
Sequence 41 - UACUGCCCUAAAUGCUCCUUCCGGC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45