miRBase entry: mdo-mir-7398a-3

Stem-loop mdo-mir-7398a-3


Accession
MI0024028
Description
Monodelphis domestica mdo-mir-7398a-3 precursor miRNA
Gene family
MIPF0001643; mir-7398


Sequence

729 reads, 14 reads per million, 5 experiments
UGUGUAGAGGCGAGAAAUAUGCUguguuguaucuuggUAAAUUUCUCGCCUUUCACAAU
((((.(((((((((((((.((((..(......)..)))).)))))))))))))))))..

Structure
--    U             A    gu uu 
  UGUG AGAGGCGAGAAAU UGCU  g  g
  |||| ||||||||||||| ||||  |   
  ACAC UUUCCGCUCUUUA AUgg  c  u
UA    -             A    uu ua 


Annotation confidence High
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Genome context
chrX: 57293442-57293500 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from mdo-mir-7398a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-7398a-3p

Accession MIMAT0028901
Description Monodelphis domestica mdo-miR-7398a-3p mature miRNA
Sequence 38 - UAAAUUUCUCGCCUUUCACAAU - 59
Evidence experimental
Illumina [1]

Mature mdo-miR-7398a-5p

Accession MIMAT0028900
Description Monodelphis domestica mdo-miR-7398a-5p mature miRNA
Sequence 1 - UGUGUAGAGGCGAGAAAUAUGCU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45