Stem-loop sequence gga-mir-7471

Accession

MI0024144 (change log)

Description

Gallus gallus miR-7471 stem-loop

Literature search

1 open access papers mention gga-mir-7471
(1 sentences)

Stem-loop

   --   --  ug    g      c  u    cg 
5'   guc  gg  ccgu cggggc gu gugg  c
     |||  ||  |||| |||||| || ||||   
3'   cgg  uc  ggcg gcccug cg cgcc  c
   gg   ug  gu    a      -  -    uu 

Deep sequencing

90 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Gallus_gallus-5.0; GCA_000002315.3)	Overlapping transcripts
chr14: 14339056-14339115 [-]	intergenic
AADN04000668.1: 9292-9351 [-]	intergenic

Database links

• miRBase Tracker:MI0024144

Mature sequence gga-miR-7471-5p

• Accession: MIMAT0029096
• Sequence: 1 - gucggugccgugcggggc - 18
• Deep sequencing: 55 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-7471-5p
  • miRDB:gga-miR-7471-5p

Mature sequence gga-miR-7471-3p

• Accession: MIMAT0029097
• Sequence: 41 - cccgagcggugcuguggcgg - 60
• Deep sequencing: 35 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-7471-3p
  • miRDB:gga-miR-7471-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).