Stem-loop mes-MIR159b

Accession

MI0024218

Description

Manihot esculenta mes-MIR159b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

6 open access papers mention mes-MIR159b
(20 sentences)

Sequence

aggguuaagaaguggagcuccuuaaaguccaauagaggaucuugcaggguagauugagcugcugagcuauggauaccacagcccuaucccauaauaaaagggaguucuuuuuuucaagucuucuuggauaggcuuguggcuugcauaucucuggagcuucauuaccuuauuauguuagauccuugUUUGGAUUGAAGGGAGCUCUAcaucuaaaucuu
.(((((.(((.((((((((((((..(((((((..((((((((.(((((((((...(((((.(.(((.((((.(..((((((.(((((((.........((((((..(((......))).))))))))))))).))))))..).)))).))).).)))))..)))))).....))).))))))))..)))))))..)))))))))))).))).))))).

Structure

a     a   a            aa       ua        u   -----      auu     g u   c    g ua      c       cauaauaaa      uu   uu 
 ggguu aga guggagcuccuu  aguccaa  gaggaucu gca     ggguag   gagcu c gag uaug a  ccacag ccuaucc         agggag  cuu  u
 ||||| ||| ||||||||||||  |||||||  |||||||| |||     ||||||   ||||| | ||| |||| |  |||||| |||||||         ||||||  |||   
 ucuaa ucu cAUCUCGAGGGA  UUAGGUU  uuccuaga ugu     uccauu   uucga g cuc auac u  gguguu ggauagg         uucuuc  gaa  u
u     a   a            AG       Ug        u   auuau      -ac     g u   u    g uc      c       ---------      -u   cu 

Annotation confidence Not enough data

Genome context

scaffold06631: 235018-235235 [-]

Mature mes-miR159b

• Accession: MIMAT0029176
• Description: Manihot esculenta mes-miR159b mature miRNA
• Sequence: 186 - UUUGGAUUGAAGGGAGCUCUA - 206
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269