Stem-loop sequence mes-MIR159c

Accession

MI0024219 (change log)

Description

Manihot esculenta miR159c stem-loop

Gene family

MIPF0000010; MIR159

Literature search

6 open access papers mention mes-MIR159c
(19 sentences)

Stem-loop

        u    u    uu                c    uac        a   g      gguag      g  g    u     aau    cug   g   aggauaa   ga 
5' ggguu uugg gagg  uaauggagcucucuuc cucc   uguaaagg ggc aaggua     gccaug cu ccag ucaug   accc   ggu ugc       gca  g
   ||||| |||| ||||  |||||||||||||||| ||||   |||||||| ||| ||||||     |||||| || |||| |||||   ||||   ||| |||       |||  a
3' ucuaa aauc uucu  guugucucgagggaag gagg   auauuuuu ccg uucuau     uggugc ga gguc aguac   uggg   ucg acg       cgu  g
        c    u    --                u    -uu        a   g      -----      a  g    c     guu    -aa   g   -------   ga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold03581: 941900-942114 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024219

Mature sequence mes-miR159c

• Accession: MIMAT0029177
• Sequence: 177 - auuggagugaagggagcucug - 197
• Evidence: not experimental

References

1. PMID:22388699 "Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)" Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J Mol Biotechnol. 53:257-269(2013).