miRBase entry: mes-MIR160g

Stem-loop mes-MIR160g


Accession
MI0024227
Description
Manihot esculenta mes-MIR160g precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
7 open access papers mention mes-MIR160g
(20 sentences)

Sequence

gugUGCCUGGCUCCCUGUAUGCCAUCugcaaagcucaucagaaagucgguggccuccgcagauggcaugcgaggagccaugcaugc
((((((.(((((((.((((((((((((((..((.(((((........))))).))..)))))))))))))).))))))).))))))

Structure
      C       C              aa  c     aga 
gugUGC UGGCUCC UGUAUGCCAUCugc  ag ucauc   a
|||||| ||||||| ||||||||||||||  || |||||    
cguacg accgagg gcguacgguagacg  uc ggugg   a
      u       a              cc  c     cug 


Annotation confidence Not enough data
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Genome context
scaffold02960: 648590-648675 [-]

Database links

Mature mes-miR160g

Accession MIMAT0029185
Description Manihot esculenta mes-miR160g mature miRNA
Sequence 4 - UGCCUGGCUCCCUGUAUGCCAUC - 26
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269