miRBase entry: mes-MIR162

Stem-loop mes-MIR162


Accession
MI0024229
Description
Manihot esculenta mes-MIR162 precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
3 open access papers mention mes-MIR162
(5 sentences)

Sequence

cuggaggcagcgguucaucgaucucuuccuggaggauuuuguuguggaauuaacacaaacacaugaaucgaUCGAUAAACCUCUGCAUCCAG
(((((.((((.((((.((((((((((....))).((((((((((((.......))).))))...)))))))))))).)))).)))).)))))

Structure
     g    c    c       ucuuccuggag     ---    -   ga 
cugga gcag gguu aucgauc           gauuu   uguu gug  a
||||| |||| |||| |||||||           |||||   |||| |||  u
GACCU CGUC CCAA UAGCUag           cuaag   acaa cac  u
     A    U    A       -----------     uac    a   aa 


Annotation confidence Not enough data
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Genome context
scaffold07762: 294285-294376 [-]

Database links

Mature mes-miR162

Accession MIMAT0029187
Description Manihot esculenta mes-miR162 mature miRNA
Sequence 72 - UCGAUAAACCUCUGCAUCCAG - 92
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269