miRBase entry: mes-MIR164b

Stem-loop mes-MIR164b


Accession
MI0024231
Description
Manihot esculenta mes-MIR164b precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
6 open access papers mention mes-MIR164b
(20 sentences)

Sequence

gcucauguUGGAGAAGCAGGGCACGUGCAaauucuauggcuucucaaaugccacucaacucuuuugcacgugcuccccuucuccaacguggu
..((((((((((((((..(((((((((((((.....((((.........)))).........)))))))))))))..)))))))))))))).

Structure
gc              CA             ----uucua    uuc 
  ucauguUGGAGAAG  GGGCACGUGCAaa         uggc   u
  ||||||||||||||  |||||||||||||         ||||   c
  ggugcaaccucuuc  cucgugcacguuu         accg   a
-u              cc             ucucaacuc    uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold08265: 3337304-3337395 [+]

Database links

Mature mes-miR164b

Accession MIMAT0029189
Description Manihot esculenta mes-miR164b mature miRNA
Sequence 9 - UGGAGAAGCAGGGCACGUGCA - 29
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269