Stem-loop mes-MIR166h

Accession

MI0024241

Description

Manihot esculenta mes-MIR166h precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

7 open access papers mention mes-MIR166h
(18 sentences)

Sequence

gguugaugggaauguuguuuggcucgaggcgauauagguuugaucuuuuaucuuugacuucugggauuauuuuuucucgugaaaauucaaagauauauauauauagcccuauguaaucUCGGACCAGGCUUCAUUCCCGUcaacc
((((((((((((((..((((((.((((((..(((((((((..((....(((((((((.((((((((........))))).)))...))))))))).....))..)).)))))))..)))))).))))))..))))))))))))))

Structure

              uu      c      cg       -  ug  -cuuu         --c   -     uua 
gguugaugggaaug  guuugg ucgagg  auauagg uu  au     uaucuuuga   uuc uggga   u
||||||||||||||  |||||| ||||||  ||||||| ||  ||     |||||||||   ||| |||||    
ccaacUGCCCUUAC  CGGACC GGCUcu  uguaucc ga  ua     auagaaacu   aag gcucu   u
              UU      A      aa       c  ua  uauau         uaa   u     uuu 

Annotation confidence Not enough data

Genome context

scaffold05979: 357827-357971 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR166h

Mature mes-miR166h

• Accession: MIMAT0029199
• Description: Manihot esculenta mes-miR166h mature miRNA
• Sequence: 119 - UCGGACCAGGCUUCAUUCCCGU - 140
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269