miRBase entry: mes-MIR167b

Stem-loop mes-MIR167b


Accession
MI0024244
Description
Manihot esculenta mes-MIR167b precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
5 open access papers mention mes-MIR167b
(21 sentences)

Sequence

ccacuagcaguUGAAGCUGCCAGCAUGAUCUaaacuuccuuuucuuuauaaucugcaucaaaaggaaagaucagaucaugugguagcuucaccuguugaugg
(((.((((((.(((((((((((.((((((((...(((((((((................)))))).)))...))))))))))))))))))).)))))).)))

Structure
   c      u           G        aaa   -      cuuuaua 
cca uagcag UGAAGCUGCCA CAUGAUCU   cuu ccuuuu       a
||| |||||| ||||||||||| ||||||||   ||| ||||||        
ggu guuguc acuucgauggu guacuaga   gaa ggaaaa       u
   a      c           -        cua   a      cuacguc 


Annotation confidence Not enough data
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Genome context
scaffold11998: 665663-665764 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR167b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR167b

Accession MIMAT0029202
Description Manihot esculenta mes-miR167b mature miRNA
Sequence 12 - UGAAGCUGCCAGCAUGAUCU - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269

  2. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85