miRBase entry: mes-MIR169d

Stem-loop mes-MIR169d


Accession
MI0024254
Description
Manihot esculenta mes-MIR169d precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
10 open access papers mention mes-MIR169d
(29 sentences)

Sequence

gagguagagaguguaauuCAGCCAAGGAUGACUUGCCGGaagcacugauuauacgguccggcaaguuguuucuuggcuacauuguacucuuuucuuc
((((.((((((((((((..(((((((((((((((((((((....(((......))))))))))))))).)))))))))..)))))))))))).))))

Structure
    u            uC         -            agca   au 
gagg agagaguguaau  AGCCAAGGA UGACUUGCCGGa    cug  u
|||| ||||||||||||  ||||||||| ||||||||||||    |||   
cuuc uuucucauguua  ucgguucuu guugaacggccu    ggc  a
    u            ca         u            ----   au 


Annotation confidence Not enough data
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Genome context
scaffold03874: 50917-51013 [+]

Database links

Mature mes-miR169d

Accession MIMAT0029212
Description Manihot esculenta mes-miR169d mature miRNA
Sequence 19 - CAGCCAAGGAUGACUUGCCGG - 39
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269