Stem-loop sequence mes-MIR169s

AccessionMI0024269 (change log)
DescriptionManihot esculenta miR169s stem-loop
Gene family MIPF0000012; MIR169_1
Literature search

10 open access papers mention mes-MIR169s
(28 sentences)

Stem-loop
   -         a     u     -cu  a    ----        uggua 
5'  uagccaagg ugacu gccug   cc uacu    aggguugc     u
    ||||||||| ||||| |||||   || ||||    ||||||||      
3'  aucgguucc acuga cggac   gg auga    ucccgacg     a
   a         -     -     uuu  -    gagc        ugaac 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Cassava4) Overlapping transcripts
scaffold05005: 11750-11840 [+]
intergenic
Clustered miRNAs
< 10kb from mes-MIR169s
mes-MIR169pscaffold05005: 2236-2331 [+]
mes-MIR169rscaffold05005: 6216-6310 [-]
mes-MIR169qscaffold05005: 6485-6593 [-]
mes-MIR169tscaffold05005: 7537-7640 [+]
mes-MIR169sscaffold05005: 11750-11840 [+]
mes-MIR169uscaffold05005: 20259-20360 [+]
Database links

Mature sequence mes-miR169s

Accession MIMAT0029227
Sequence

1 - 

uagccaaggaugacuugccug

 - 21

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Evidence not experimental

References

1
PMID:22388699 "Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)" Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J Mol Biotechnol. 53:257-269(2013).