Stem-loop sequence mes-MIR169s

Accession

MI0024269 (change log)

Description

Manihot esculenta miR169s stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

10 open access papers mention mes-MIR169s
(28 sentences)

Stem-loop

   -         a     u     -cu  a    ----        uggua 
5'  uagccaagg ugacu gccug   cc uacu    aggguugc     u
    ||||||||| ||||| |||||   || ||||    ||||||||      
3'  aucgguucc acuga cggac   gg auga    ucccgacg     a
   a         -     -     uuu  -    gagc        ugaac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold05005: 11750-11840 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mes-MIR169s

• mes-MIR169p: scaffold05005: 2236-2331 [+]
• mes-MIR169r: scaffold05005: 6216-6310 [-]
• mes-MIR169q: scaffold05005: 6485-6593 [-]
• mes-MIR169t: scaffold05005: 7537-7640 [+]
• mes-MIR169s: scaffold05005: 11750-11840 [+]
• mes-MIR169u: scaffold05005: 20259-20360 [+]

Database links

• miRBase Tracker:MI0024269

Mature sequence mes-miR169s

• Accession: MIMAT0029227
• Sequence: 1 - uagccaaggaugacuugccug - 21
• Evidence: not experimental

References

1. PMID:22388699 "Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)" Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J Mol Biotechnol. 53:257-269(2013).