Stem-loop mes-MIR169y

Accession

MI0024275

Description

Manihot esculenta mes-MIR169y precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

10 open access papers mention mes-MIR169y
(28 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUGauuuccuagcauuuuggguuguggcuugcaacaaucuuuauacaaauguaacccuucauacagguucucaggcagucuccuuggcuaa
((((((((((.((((.((((((...(((........((((((....(((..............)))...)))))).......)))...)))))))))))))))))))).

Structure

-          U    U      uuu   agcauuuu      uggc   caacaa 
 UAGCCAAGGA GACU GCCUGa   ccu        ggguug    uug      u
 |||||||||| |||| ||||||   |||        ||||||    |||       
 aucgguuccu cuga cggacu   gga        cccaau    aac      c
a          -    -      cuu   -cauacuu      -gua   auauuu 

Annotation confidence Not enough data

Genome context

scaffold03800: 17965-18073 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR169y

Mature mes-miR169y

• Accession: MIMAT0029233
• Description: Manihot esculenta mes-miR169y mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCUG - 21
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269