miRBase entry: mes-MIR169aa

Stem-loop mes-MIR169aa


Accession
MI0024277
Description
Manihot esculenta mes-MIR169aa precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
10 open access papers mention mes-MIR169aa
(28 sentences)

Sequence

guuuggUAGCCAAGGAUGACUUGCCUGcaacuucauuggaagagaauuuuuauauauagaggcagaaaagucuuguuuuauuuguuguaguagguggucuccuuggcuaaucugac
(((.((((((((((((.((((.((((((.((..((.(((((((((.(((((.............))))).)))).)))))..))..)).))))))))))))))))))).))).)))

Structure
   u   -         U    U      a  uu  -u     -    a     auaua 
guu ggU AGCCAAGGA GACU GCCUGc ac  ca  uggaa gaga uuuuu     u
||| ||| ||||||||| |||| |||||| ||  ||  ||||| |||| |||||     a
cag cua ucgguuccu cugg uggaug ug  gu  auuuu uucu aaaag     g
   u   a         -    -      a  uu  uu     g    g     acgga 


Annotation confidence Not enough data
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Genome context
scaffold00363: 71664-71779 [-]

Database links

Mature mes-miR169aa

Accession MIMAT0029235
Description Manihot esculenta mes-miR169aa mature miRNA
Sequence 7 - UAGCCAAGGAUGACUUGCCUG - 27
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269