miRBase entry: mes-MIR169ab

Stem-loop mes-MIR169ab


Accession
MI0024278
Description
Manihot esculenta mes-MIR169ab precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
10 open access papers mention mes-MIR169ab
(28 sentences)

Sequence

guaugaUAGCCAAGGAUGACUUGCCUAucuccugccguagauauauaaaaaaaaaugcacaagaaagaauauggugggagguucuuucguauggguggagcuaggcagucuccuuuggcuagucucac
....(((((((((((..((((.(((((.(((((((((((..............................)))))))))))(((((.((.....)).))))))))))))))..)))))))).)))....

Structure
guau   -        AU    U     --------------------u           gauauauaaaaaaa 
    gaU AGCCAAGG  GACU GCCUA                     cuccugccgua              a
    ||| ||||||||  |||| |||||                     |||||||||||               
    cug ucgguuuc  cuga cggau                     gagggugguau              a
cacu   a        cu    -     cgagguggguaugcuuucuug           aagaaagaacacgu 


Annotation confidence Not enough data
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Genome context
scaffold09876: 536550-536677 [+]

Database links

Mature mes-miR169ab

Accession MIMAT0029236
Description Manihot esculenta mes-miR169ab mature miRNA
Sequence 7 - UAGCCAAGGAUGACUUGCCUA - 27
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269