Stem-loop mes-MIR171j

Accession

MI0024288

Description

Manihot esculenta mes-MIR171j precursor miRNA

Literature search

7 open access papers mention mes-MIR171j
(16 sentences)

Sequence

gugaaauagcgauugugauauuggccugguucacucagacguggaaaaccuacccuuuucucggcuuuauuuugcuuggacgauguugucuugcucUGAUUGAGCCGUGCCAAUAUCucagugcucuuucau
((((((.(((.((((.(((((((((.(((((((.(((((((.(((((........))))).))..........((..(((((....))))).))))))).))))))).))))))))).))))))).))))))

Structure

      u   g    u         c       c     -------------------------------  u     acc 
gugaaa agc auug gauauuggc ugguuca ucaga                               cg ggaaa   u
|||||| ||| |||| ||||||||| ||||||| |||||                               || |||||    
uacuuu ucg ugac CUAUAACCG GCCGAGU AGUcu                               gc cuuuu   a
      c   -    u         U       U     cguucuguuguagcagguucguuuuauuucg  u     ccc 

Annotation confidence Not enough data

Genome context

scaffold06512: 1322382-1322513 [+]

Mature mes-miR171j

• Accession: MIMAT0029246
• Description: Manihot esculenta mes-miR171j mature miRNA
• Sequence: 97 - UGAUUGAGCCGUGCCAAUAUC - 117
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269