miRBase entry: mes-MIR172d

Stem-loop mes-MIR172d


Accession
MI0024292
Description
Manihot esculenta mes-MIR172d precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
4 open access papers mention mes-MIR172d
(8 sentences)

Sequence

gcuggugcagcaucaucaagauucacaugcaaaugcauuucuuugucuuucucucucucuuucucucugucuaucuauuuuuucuugguuuugaaggaugagagugAGAAUCUUGAUGAUGCUGCAUcggc
((((((((((((((((((((((((..((((....))))...........((.(((((((((((.............................)))))).))))).))))))))))))))))))))))))))

Structure
                        acaugcaaaugcauuucuuugucuu  u     -      ucucugucuaucu 
gcuggugcagcaucaucaagauuc                         uc cucuc ucuuuc             a
||||||||||||||||||||||||                         || ||||| ||||||             u
cggcUACGUCGUAGUAGUUCUAAG                         Ag gagag aggaag             u
                        -------------------------  u     u      uuuugguucuuuu 


Annotation confidence Not enough data
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Genome context
scaffold00224: 433803-433933 [+]

Database links

Mature mes-miR172d

Accession MIMAT0029250
Description Manihot esculenta mes-miR172d mature miRNA
Sequence 107 - AGAAUCUUGAUGAUGCUGCAU - 127
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269