miRBase entry: mes-MIR172e

Stem-loop mes-MIR172e


Accession
MI0024293
Description
Manihot esculenta mes-MIR172e precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
4 open access papers mention mes-MIR172e
(8 sentences)

Sequence

agucacuguuugccgauggagcaucaucaagauucacaaacuuuaucuggggcucguggggguggagaacuuggugauaguggcuuuugguguggucccuuuugcuucaauccaaauagcccuuugauaugGGAAUCUUGAUGAUGCUGCAGcggcaauaaguggcu
(((((((..((((((.((.((((((((((((((((.((.....((((.((((((.((..((((((((.....((.(((....(((...)))...))))).....)))).))))..))))))))..)))))).)))))))))))))))).)).))))))..)))))))

Structure
       gu      a  g                a  aacuu    -u      c  gg    -    aacuu  u   agug   u 
agucacu  uugccg ug agcaucaucaagauuc ca     uauc  ggggcu gu  gggu ggag     gg gau    gcu  
|||||||  |||||| || |||||||||||||||| ||     ||||  |||||| ||  |||| ||||     || |||    ||| u
ucgguga  aacggc AC UCGUAGUAGUUCUAAG gu     auag  ucccga ua  ccua cuuc     cc cug    ugg  
       au      G  G                G  -----    uu      -  aa    a    guuuu  -   -gug   u 


Annotation confidence Not enough data
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Genome context
scaffold06705: 57288-57454 [+]

Database links

Mature mes-miR172e

Accession MIMAT0029251
Description Manihot esculenta mes-miR172e mature miRNA
Sequence 132 - GGAAUCUUGAUGAUGCUGCAG - 152
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269