Stem-loop mes-MIR319d

Accession

MI0024298

Description

Manihot esculenta mes-MIR319d precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

6 open access papers mention mes-MIR319d
(20 sentences)

Sequence

uuuugccuugugcaaguuccaugugauguauuaugagaaacgguuuaagagagcuuccuucaguccacucauggacgggugaaggguuugaauuauaugccgacucauucauucaaacgcaauagaaaaaggguagagguugcuauugugaauguaugaaugaugcgggagauaaaauuucauccuucucuucucugugcUUGGACUGAAGGGAGCUCCCUuuaauuguuuccuucaugaug
.(((((.....)))))............(((((((((((((((((.(((.(((((((((((((((((..((((((.(((.((((((..((((((((.(.(((..((((((((.((..((((((((.................))))))))..)).))))))))..))).).))))...)))))))))).))).))))))..))))))))))))))))).))).)))))))))..))))))))

Structure

uuuugccuugugcaaguuccaugugaug        --         u   a                 cu      c   u      uu    ---    a g   ac        u  aa        aaaaagg 
                            uauuauga  gaaacgguu aag gagcuuccuucagucca  caugga ggg gaaggg  ugaa   uuau u ccg  ucauucau ca  cgcaauag       g
                            ||||||||  ||||||||| ||| |||||||||||||||||  |||||| ||| ||||||  ||||   |||| | |||  |||||||| ||  ||||||||       u
                            guaguacu  cuuuguuaa uUC CUCGAGGGAAGUCAGGU  gugucu uuc cuuccu  acuu   aaua a ggc  aguaagua gu  guguuauc       a
----------------------------        uc         u   C                 Uc      c   u      --    uaa    g g   gu        u  aa        guuggag 

Annotation confidence Not enough data

Genome context

scaffold03429: 24109-24350 [+]

Mature mes-miR319d

• Accession: MIMAT0029256
• Description: Manihot esculenta mes-miR319d mature miRNA
• Sequence: 201 - UUGGACUGAAGGGAGCUCCCU - 221
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269