miRBase entry: mes-MIR393a

Stem-loop mes-MIR393a


Accession
MI0024304
Description
Manihot esculenta mes-MIR393a precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
4 open access papers mention mes-MIR393a
(20 sentences)

Sequence

acuauaggagacaUCCAAAGGGAUCGCAUUGAUCcuaaaacucuucucuuucauaauuuaaucucucuuuuggaucaugcuaucccuuuggauuccuccuuuggu
((((.(((((..((((((((((((.((((.(((((....................................))))))))).))))))))))))..))))).))))

Structure
    u     ac            C    U     uaaaacucuucucuuuc 
acua aggag  aUCCAAAGGGAU GCAU GAUCc                 a
|||| |||||  |||||||||||| |||| |||||                  
uggu uccuc  uagguuucccua cgua cuagg                 u
    u     cu            u    -     uuuucucucuaauuuaa 


Annotation confidence Not enough data
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Genome context
scaffold12439: 276547-276651 [-]

Database links

Mature mes-miR393a

Accession MIMAT0029262
Description Manihot esculenta mes-miR393a mature miRNA
Sequence 14 - UCCAAAGGGAUCGCAUUGAUC - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269

  2. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85