miRBase entry: mes-MIR394b

Stem-loop mes-MIR394b


Accession
MI0024308
Description
Manihot esculenta mes-MIR394b precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
3 open access papers mention mes-MIR394b
(15 sentences)

Sequence

ucauguggguuuaacaaaggguuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCcaucuauggaaaucuucucuuuuucuuuuguggaggugggcauacugucaagugagcucuguuggucucucuuuguaaaacccucauga
(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((((.....(((((........)))))...)).)))))))))))...)))).)))))))))))).))...)))))))).)))))).)))))

Structure
     u      a        uuu  u            -    UUC           -  ucuau     ucu 
ucaug ggguuu acaaaggg   cu acagaguuuaUU GGCA   UGUCCACCUCC ca     ggaaa   u
||||| |||||| ||||||||   || |||||||||||| ||||   ||||||||||| ||     |||||    
aguac cccaaa uguuucuc   gg ugucucgaguga cugu   acggguggagg gu     cuuuu   c
     u      a        ucu  u            a    cau           u  --uuu     ucu 


Annotation confidence Not enough data
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Genome context
scaffold02943: 554374-554519 [+]

Database links

Mature mes-miR394b

Accession MIMAT0029266
Description Manihot esculenta mes-miR394b mature miRNA
Sequence 38 - UUGGCAUUCUGUCCACCUCC - 57
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269