miRBase entry: mes-MIR395e

Stem-loop mes-MIR395e


Accession
MI0024314
Description
Manihot esculenta mes-MIR395e precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
6 open access papers mention mes-MIR395e
(11 sentences)

Sequence

guuuggggucaccuugaguuccuccuacugcuucaguacugaagcuguucgaucgucuuagcaauggcaugaaauuggcagcuuaauuaguugggaaaaugaaauggcgauuugCUGAAGGGUUUGGAGGAACUCugggugcucccaaacu
((((((((.(((((.((((((((((.(((.((((((((.....((((((..((..(((((((((((((.((.......)))))..))).)))))))..))..))))))....)))))))))))..)))))))))).))))).)))))))).

Structure
-        u     u          -u   g        cugaa      cg  cg       -   --   a  aa 
 guuugggg caccu gaguuccucc  acu cuucagua     gcuguu  au  ucuuagc aau  ggc ug  a
 |||||||| ||||| ||||||||||  ||| ||||||||     ||||||  ||  ||||||| |||  ||| ||  u
 caaacccu guggg CUCAAGGAGG  UGG GAAGUCgu     cgguaa  ua  aggguug uua  ucg ac  u
u        c     u          UU   -        -uuag      ag  aa       a   au   -  gg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold00080: 382438-382588 [-]

Database links

Mature mes-miR395e

Accession MIMAT0029272
Description Manihot esculenta mes-miR395e mature miRNA
Sequence 115 - CUGAAGGGUUUGGAGGAACUC - 135
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269