Stem-loop sequence mes-MIR396a

Accession

MI0024315 (change log)

Description

Manihot esculenta miR396a stem-loop

Gene family

MIPF0000047; MIR396

Literature search

4 open access papers mention mes-MIR396a
(15 sentences)

Stem-loop

   u      c  c    uc            c          u ucu    c     uugugguuauugcaugccacg 
5'  ggcccu uu guau  uuccacagcuuu uugaacugca c   acaa gaagc                     g
    |||||| || ||||  |||||||||||| |||||||||| |   |||| |||||                      
3'  cuggga ag caua  agggugucgaaa aacuuggcgu g   uguu uuuug                     c
   a      c  u    ga            u          u uuu    c     uucuucggcgaauuaaccgcu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold05760: 81136-81289 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mes-MIR396a

• mes-MIR396a: scaffold05760: 81136-81289 [-]
• mes-MIR396d: scaffold05760: 75842-75935 [+]

Database links

• miRBase Tracker:MI0024315

Mature sequence mes-miR396a

• Accession: MIMAT0029273
• Sequence: 18 - uuccacagcuuucuugaacug - 38
• Evidence: not experimental

References

1. PMID:22388699 "Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)" Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J Mol Biotechnol. 53:257-269(2013).