miRBase entry: mes-MIR396c

Stem-loop mes-MIR396c


Accession
MI0024317
Description
Manihot esculenta mes-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention mes-MIR396c
(15 sentences)

Sequence

ugucaugcuuUUCCACAGCUUUCUUGAACUUcuucuucuucaucuucugcuugauuuuggcuuagaaguucaagaaagcugugggagaacauggca
(((((((.(((((((((((((((((((((((((...((...(((........)))...))...))))))))))))))))))))))))).)))))))

Structure
       c                         ucu  uuc   uuc 
ugucaug uuUUCCACAGCUUUCUUGAACUUcu   uc   auc   u
||||||| |||||||||||||||||||||||||   ||   |||    
acgguac agagggugucgaaagaacuugaaga   gg   uag   g
       a                         uuc  uuu   uuc 


Annotation confidence Not enough data
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Genome context
scaffold12498: 129874-129969 [-]

Database links

Mature mes-miR396c

Accession MIMAT0029275
Description Manihot esculenta mes-miR396c mature miRNA
Sequence 11 - UUCCACAGCUUUCUUGAACUU - 31
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269