miRBase entry: mes-MIR396d

Stem-loop mes-MIR396d


Accession
MI0024318
Description
Manihot esculenta mes-MIR396d precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention mes-MIR396d
(13 sentences)

Sequence

UUCCACAGCUUUCUUGAACUUucuuuuacugccuuuucaaaucucucucuagauucaauagguagaacuuuggaagcucaagaaagcuguggga
(((((((((((((((((.(((((.....((((((.....(((((......)))))....))))))......))))).)))))))))))))))))

Structure
                 A     -uuuua      uuuca     cu 
UUCCACAGCUUUCUUGA CUUuc      cugccu     aaucu  c
||||||||||||||||| |||||      ||||||     |||||   
agggugucgaaagaacu gaagg      gaugga     uuaga  u
                 c     uuucaa      -uaac     uc 


Annotation confidence Not enough data
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Genome context
scaffold05760: 75842-75935 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR396d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR396d

Accession MIMAT0029276
Description Manihot esculenta mes-miR396d mature miRNA
Sequence 1 - UUCCACAGCUUUCUUGAACUU - 21
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269