Stem-loop mes-MIR396d

Accession

MI0024318

Description

Manihot esculenta mes-MIR396d precursor miRNA

Literature search

3 open access papers mention mes-MIR396d
(13 sentences)

Sequence

UUCCACAGCUUUCUUGAACUUucuuuuacugccuuuucaaaucucucucuagauucaauagguagaacuuuggaagcucaagaaagcuguggga
(((((((((((((((((.(((((.....((((((.....(((((......)))))....))))))......))))).)))))))))))))))))

Structure

                 A     -uuuua      uuuca     cu 
UUCCACAGCUUUCUUGA CUUuc      cugccu     aaucu  c
||||||||||||||||| |||||      ||||||     |||||   
agggugucgaaagaacu gaagg      gaugga     uuaga  u
                 c     uuucaa      -uaac     uc 

Annotation confidence Not enough data

Genome context

scaffold05760: 75842-75935 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR396d

Mature mes-miR396d

• Accession: MIMAT0029276
• Description: Manihot esculenta mes-miR396d mature miRNA
• Sequence: 1 - UUCCACAGCUUUCUUGAACUU - 21
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269