miRBase entry: mes-MIR399d

Stem-loop mes-MIR399d


Accession
MI0024324
Description
Manihot esculenta mes-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
6 open access papers mention mes-MIR399d
(10 sentences)

Sequence

caggguaaacucuccauuggcaggcagccacuuacagaaucaauaugcauuauuuauuuuaaucugcucucUGCCAAAGGAGAUUUGCCCGG
..(((((((.(((((.((((((((.(((.......(((((.((((.....)))).))))).....))).)))))))).))))))))))))..

Structure
ca       c     a        c   cacuuac     c    u 
  ggguaaa ucucc uuggcagg agc       agaau aaua g
  ||||||| ||||| |||||||| |||       ||||| |||| c
  CCCGUUU AGAGG AACCGUcu ucg       uuuua uuau a
GG       -     A        c   --ucuaa     u    u 


Annotation confidence Not enough data
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Genome context
scaffold10535: 13795-13886 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mes-MIR399d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR399d

Accession MIMAT0029282
Description Manihot esculenta mes-miR399d mature miRNA
Sequence 72 - UGCCAAAGGAGAUUUGCCCGG - 92
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269