Stem-loop mes-MIR399e

Accession

MI0024325

Description

Manihot esculenta mes-MIR399e precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

6 open access papers mention mes-MIR399e
(8 sentences)

Sequence

cagggcaagaucuccauuggcaggcagccacuuauaaaacuaauaugcuuucuucguuuuaguuugcucucUGCCAAAGGAGAUUUGCUCGG
..(((((.(((((((.((((((((.(((........(((((((.(((.......))).)))))))))).)))))))).))))))))))))..

Structure

ca     a       a        c   cacuuaua       u   cu 
  gggca gaucucc uuggcagg agc        aaacuaa aug  u
  ||||| ||||||| |||||||| |||        ||||||| |||  u
  CUCGU UUAGAGG AACCGUcu ucg        uuugauu ugc  c
GG     -       A        c   --------       u   uu 

Annotation confidence Not enough data

Genome context

scaffold10535: 4988-5079 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mes-MIR399e

Mature mes-miR399e

• Accession: MIMAT0029283
• Description: Manihot esculenta mes-miR399e mature miRNA
• Sequence: 72 - UGCCAAAGGAGAUUUGCUCGG - 92
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269