Stem-loop mes-MIR477c

Accession

MI0024334

Description

Manihot esculenta mes-MIR477c precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

3 open access papers mention mes-MIR477c
(6 sentences)

Sequence

ggaauucucgucaacgacaacaacaauggcauauccauuauucaCUCUCCCUCAAGGGCUUCUGuugguuuucuggucgaccgaaugaccaaguaccuacacggaagaccuuagggagaguggaaaauacuugccauuugauuucauggaauuauugcucuacuccgagaauuuc
((((((((((.....(((((....(((((((.....(((.((((((((((((.((((.(((((((.(((....(((((........)))))...)))...))))))).)))))))))))))))).)))...)))))))((((((....))))))))).)).....))))))))))

Structure

          ucaac  -   ------------caac       uaucc   a            C    G       --u   uuuc     gac 
ggaauucucg     ga caa                aauggca     auu uucaCUCUCCCU AAGG CUUCUGu   ggu    ugguc   c
||||||||||     || |||                |||||||     ||| |||||||||||| |||| |||||||   |||    |||||    
cuuuaagagc     cu guu                uuaccgu     uaa aggugagaggga uucc gaaggca   cca    accag   g
          cucau  c   auuaagguacuuuagu       --uca   a            -    a       cau   -uga     uaa 

Annotation confidence Not enough data

Genome context

scaffold03175: 114710-114884 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR477c

Mature mes-miR477c

• Accession: MIMAT0029292
• Description: Manihot esculenta mes-miR477c mature miRNA
• Sequence: 45 - CUCUCCCUCAAGGGCUUCUG - 64
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269