Stem-loop mes-MIR477d

Accession

MI0024335

Description

Manihot esculenta mes-MIR477d precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

3 open access papers mention mes-MIR477d
(6 sentences)

Sequence

caaggcauugguugcucaCUCUCCCUCAAGGGCUUCUCcaaugugcccuagcaugcaugcauccaaacauuaaaagaagaacgaaagagaaaaaacauuuucgacuagcugggguauggaugcgagaagcucuugcagggggagugaacaagcagugacuug
((((.(((((.(((.(((((((((((((((((((((((((.(((((((((((....(((........)))...........((((((.(......).))))))....)))))))))))..)).)))))))))))).))))))))))).))).))))).))))

Structure

    g     g   c           -            -  -a           augcaugcauccaaacauuaaaagaagaa      a aa 
caag cauug uug ucaCUCUCCCU CAAGGGCUUCUC ca  ugugcccuagc                             cgaaag g  a
|||| ||||| ||| ||||||||||| |||||||||||| ||  |||||||||||                             |||||| |   
guuc gugac aac agugaggggga guucucgaagag gu  guauggggucg                             gcuuuu c  a
    a     g   a           c            c  ag           -------------------------auca      a aa 

Annotation confidence Not enough data

Genome context

scaffold02226: 32017-32178 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR477d

Mature mes-miR477d

• Accession: MIMAT0029293
• Description: Manihot esculenta mes-miR477d mature miRNA
• Sequence: 19 - CUCUCCCUCAAGGGCUUCUC - 38
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269