Stem-loop sequence mes-MIR535b

Accession

MI0024343 (change log)

Description

Manihot esculenta miR535b stem-loop

Gene family

MIPF0000136; MIR535

Literature search

4 open access papers mention mes-MIR535b
(9 sentences)

Stem-loop

          -   ca   -gu         g   g      g    c    uu     - a 
5' gcuuuga cau  uuc   ugacaacga aga agcacg uugu agca  ucaug c a
   ||||||| |||  |||   ||||||||| ||| |||||| |||| ||||  ||||| |  
3' cgagacu gug  aag   acuguugcu ucu ucgugc aaca uugu  aguac g g
          c   --   aau         a   g      g    u    -c     a g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold01190: 166527-166640 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mes-MIR535b

• mes-MIR535b: scaffold01190: 166527-166640 [-]
• mes-MIR535d: scaffold01190: 159468-159600 [-]

Database links

• miRBase Tracker:MI0024343

Mature sequence mes-miR535b

• Accession: MIMAT0029301
• Sequence: 18 - ugacaacgagagagagcacgg - 38
• Evidence: not experimental

References

1. PMID:22388699 "Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)" Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J Mol Biotechnol. 53:257-269(2013).