Stem-loop sequence mes-MIR828a

Accession

MI0024345 (change log)

Description

Manihot esculenta miR828a stem-loop

Gene family

MIPF0000544; MIR828

Literature search

3 open access papers mention mes-MIR828a
(6 sentences)

Stem-loop

         --         u                 uc  --au      u     uu   ua     ucucc     uuuucuuuc 
5' ccuccu  uguaauguu cuugcucaaaugaguau  ca    cacagu gcauu  gca  cacaa     uuugc         a
   ||||||  ||||||||| |||||||||||||||||  ||    |||||| |||||  |||  |||||     |||||         g
3' ggaggg  auauuguaa gaacgaguuuacucgua  gu    gugucg cguag  cgu  guguu     aaaug         u
         ua         u                 ga  cucu      u     -u   ug     ---uu     ucaccucua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold06377: 35055-35221 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024345

Mature sequence mes-miR828a

• Accession: MIMAT0029303
• Sequence: 16 - ucuugcucaaaugaguauucca - 37
• Evidence: not experimental

References

1. PMID:22388699 "Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)" Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J Mol Biotechnol. 53:257-269(2013).