Stem-loop sequence sly-MIR168a

Accession

MI0024352 (change log)

Description

Solanum lycopersicum miR168a stem-loop

Gene family

MIPF0000081; MIR168

Literature search

20 open access papers mention sly-MIR168a
(68 sentences)

Stem-loop

       u     c          u        --ca       gcgccgggaauaaugccggacgaacgacggcgguguua 
5' cucu auucg uuggugcagg cgggaccu    uucgccg                                      a
   |||| ||||| |||||||||| ||||||||    |||||||                                      u
3' gagg uaagu aacuacguuc guccuggg    aagcggc                                      u
       u     c          c        uuua       gauuaguuuguagauaggcagccacugucgaaaucauc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr8: 558753-558911 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024352

Mature sequence sly-miR168a-5p

• Accession: MIMAT0031129
• Sequence: 8 - ucgcuuggugcaggucgggac - 28
• Evidence: experimental; Illumina [1]

Mature sequence sly-miR168a-3p

• Accession: MIMAT0031130
• Sequence: 134 - ccugccuugcaucaacugaau - 154
• Evidence: experimental; Illumina [1]

References

1. PMID:23080016 "The developmental outcomes of P0-mediated ARGONAUTE destabilization in tomato" Hendelman A, Kravchik M, Stav R, Zik M, Lugassi N, Arazi T Planta. 237:363-377(2013).