Stem-loop sequence sly-MIR168b

Accession

MI0024353 (change log)

Description

Solanum lycopersicum miR168b stem-loop

Gene family

MIPF0000081; MIR168

Literature search

19 open access papers mention sly-MIR168b
(62 sentences)

Stem-loop

    ug g ug     uc     c          u         -c  -   c       auggcgguagcugacggcgacggcagc 
5' u  c g  guuuc  auucg uuggugcagg cgggaccua  cu cgc ggcaaca                           g
   |  | |  |||||  ||||| |||||||||| |||||||||  || ||| |||||||                           u
3' a  g c  cagag  uaagu aacuacguuc gcccugggu  ga gcg uuguugu                           a
    gu g gu     ga     c          c         uu  u   -       acauuuuuauucuaagaaaaaauggcc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr12: 65227958-65228125 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024353

Mature sequence sly-miR168b-5p

• Accession: MIMAT0031131
• Sequence: 18 - ucgcuuggugcaggucgggac - 38
• Evidence: experimental; Illumina [1]

Mature sequence sly-miR168b-3p

• Accession: MIMAT0031132
• Sequence: 133 - cccgccuugcaucaacugaau - 153
• Evidence: experimental; Illumina [1]

References

1. PMID:23080016 "The developmental outcomes of P0-mediated ARGONAUTE destabilization in tomato" Hendelman A, Kravchik M, Stav R, Zik M, Lugassi N, Arazi T Planta. 237:363-377(2013).