miRBase entry: lja-MIR171b

Stem-loop lja-MIR171b


Accession
MI0024378
Description
Lotus japonicus lja-MIR171b precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
2 open access papers mention lja-MIR171b
(9 sentences)

Sequence

gcacaaauuaacaagguauugacgcgucucaauuugaagacauggcuggcuaacaugaaaaccaaucauguaguuUGAUUGAGCCGCGUCAAUAUCuugcuuuugcgu
((.((((....(((((((((((((((.(((((((.((..((((((.(((............))).))))))..)).))))))).)))))))))))))))..)))).))

Structure
  a    uuaa               u       u  ag      c   cuaac 
gc caaa    caagguauugacgcg cucaauu ga  acaugg ugg     a
|| ||||    ||||||||||||||| ||||||| ||  |||||| |||      
ug guuu    guuCUAUAACUGCGC GAGUUAG uu  uguacu acc     u
  c    --uc               C       U  ga      a   aaaag 


Annotation confidence Not enough data
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Genome context
Chr6: 26439979-26440086 [-]

Database links

Mature lja-miR171b

Accession MIMAT0029315
Description Lotus japonicus lja-miR171b mature miRNA
Sequence 76 - UGAUUGAGCCGCGUCAAUAUC - 96
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154