miRBase entry: lja-MIR171c

Stem-loop lja-MIR171c


Accession
MI0024379
Description
Lotus japonicus lja-MIR171c precursor miRNA
Gene family
MIPF0000104; MIR171_2

Literature search
2 open access papers mention lja-MIR171c
(10 sentences)

Sequence

gcaaaagcagacauggcgugauguugaucuggcucauauuuaaguauaaguguaucuuaucaacuucagaUGAGCCGAAUCAAUAUCACUCuugucuucuuuuuugc
(((((((.(((((.((.(((((((((((.((((((((....(((((((((.....)))))..))))...)))))))).))))))))))))).)))))...)))))))

Structure
       --c     u  c           c        auuu    --     u 
gcaaaag   agaca gg gugauguugau uggcucau    aagu  auaag g
|||||||   ||||| || ||||||||||| ||||||||    ||||  ||||| u
cguuuuu   ucugu CU CACUAUAACUA GCCGAGUa    uuca  uauuc a
       ucu     u  -           A        -gac    ac     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lja-miR171c

Accession MIMAT0029316
Description Lotus japonicus lja-miR171c mature miRNA
Sequence 71 - UGAGCCGAAUCAAUAUCACUC - 91
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154