miRBase entry: lja-MIR171d

Stem-loop lja-MIR171d


Accession
MI0024380
Description
Lotus japonicus lja-MIR171d precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
2 open access papers mention lja-MIR171d
(8 sentences)

Sequence

gagaaagCGAUGUUGGUGAGGUUCAAUCugaagacggauuuacaugaagaagcaguaaaauacgaucucagaUUGAGCCGCGCCAAUAUCACUuuucuu
..(((((.((((((((((.((((((((((((.((((..(((((.((......)))))))...)).)))))))))))))).)))))))))).)))))...

Structure
-ga     C          A            a  -  -ga     a  aa 
   gaaag GAUGUUGGUG GGUUCAAUCuga ga cg   uuuac ug  g
   ||||| |||||||||| |||||||||||| || ||   ||||| ||   
   uuuUC CUAUAACCGC CCGAGUUagacu cu gc   aaaug ac  a
uuc     A          G            -  a  aua     -  ga 


Annotation confidence Not enough data
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Genome context
Chr4: 27721691-27721789 [+]

Database links

Mature lja-miR171d-3p

Accession MIMAT0029317
Description Lotus japonicus lja-miR171d-3p mature miRNA
Sequence 8 - CGAUGUUGGUGAGGUUCAAUC - 28
Evidence experimental
cloned [1]

Mature lja-miR171d-5p

Accession MIMAT0029318
Description Lotus japonicus lja-miR171d-5p mature miRNA
Sequence 73 - UUGAGCCGCGCCAAUAUCACU - 93
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154