Stem-loop sequence lja-MIR171d

Accession

MI0024380 (change log)

Description

Lotus japonicus miR171d stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

2 open access papers mention lja-MIR171d
(8 sentences)

Stem-loop

         - c          a            a  -  -ga     a  aa 
5' gagaaa g gauguuggug gguucaaucuga ga cg   uuuac ug  g
   |||||| | |||||||||| |||||||||||| || ||   ||||| ||   
3' uucuuu c cuauaaccgc ccgaguuagacu cu gc   aaaug ac  a
         u a          g            -  a  aua     -  ga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (lj2.5): Chr4: 27721691-27721789 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024380

Mature sequence lja-miR171d-3p

• Accession: MIMAT0029317
• Sequence: 8 - cgauguuggugagguucaauc - 28
• Evidence: experimental; cloned [1]

Mature sequence lja-miR171d-5p

• Accession: MIMAT0029318
• Sequence: 73 - uugagccgcgccaauaucacu - 93
• Evidence: experimental; cloned [1]

References

1. PMID:23071252 "Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus" De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O Plant Physiol. 160:2137-2154(2012).