miRBase entry: lja-MIR172a

Stem-loop lja-MIR172a


Accession
MI0024381
Description
Lotus japonicus lja-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
1 open access papers mention lja-MIR172a
(2 sentences)

Sequence

gcugguggagcaucaucaagauucacaagcuuuaagggguggauuguguuugggguggucccuaauugcuccauaucaauuugcucuuugauuugAGAAUCUUGAUGAUGCUGCAGuagc
((((.((.((((((((((((((((.((((..(((((((((((((((....(((((((((.....)))))))))...))))))))))))))))))).)))))))))))))))).)).))))

Structure
    g  g                a    cu               uguu         c 
gcug ug agcaucaucaagauuc caag  uuaagggguggauug    ugggguggu c
|||| || |||||||||||||||| ||||  |||||||||||||||    ||||||||| c
cgau AC UCGUAGUAGUUCUAAG guuu  aguuucucguuuaac    accucguua u
    G  G                A    --               -uau         a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lja-miR172a

Accession MIMAT0029319
Description Lotus japonicus lja-miR172a mature miRNA
Sequence 96 - AGAAUCUUGAUGAUGCUGCAG - 116
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154