Stem-loop sequence lja-MIR390a

Accession

MI0024384 (change log)

Description

Lotus japonicus miR390a stem-loop

Gene family

MIPF0000101; MIR390

Literature search

1 open access papers mention lja-MIR390a
(10 sentences)

Stem-loop

              u          g           -u   au       -u     u 
5' ggagaaucugu aagcucagga ggauagcgcca  gau  auauuga  gcagu u
   ||||||||||| |||||||||| |||||||||||  |||  |||||||  |||||  
3' cuucuugggua uuugaguccu ccuaucgcggu  cug  uauaacu  uguua c
              c          a           uu   gu       uc     u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (lj2.5): Chr2: 34450643-34450754 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024384

Mature sequence lja-miR390a-5p

• Accession: MIMAT0029322
• Sequence: 13 - aagcucaggagggauagcgcc - 33
• Evidence: experimental; cloned [1], Northern [1]

Mature sequence lja-miR390a-3p

• Accession: MIMAT0029323
• Sequence: 82 - cgcuauccauccugaguuuca - 102
• Evidence: experimental; cloned [1]

References

1. PMID:23071252 "Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus" De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O Plant Physiol. 160:2137-2154(2012).