miRBase entry: lja-MIR7516

Stem-loop lja-MIR7516


Accession
MI0024388
Description
Lotus japonicus lja-MIR7516 precursor miRNA


Sequence

gccguucaauuuuggucgcgaguaaaauugUAGCGGGUGUCUUCGCCUCUGAaccuuugccuauugugcuguuaaccauucucagccuggcuucAGAGACGUGACUCCCGCUACGcauuugcucgccaucucugcugc
((((........)))).(((((((((..(((((((((.(((..((.(((((((.....(((......((((...........))))..)))))))))).)).))).)))))))))..)))))))))............

Structure
gccguucaauuuugguc         au         U   UU  C       ccuuu   uauugu    uuaa 
                 gcgaguaaa  ugUAGCGGG GUC  CG CUCUGAa     gcc      gcug    c
                 |||||||||  ||||||||| |||  || |||||||     |||      ||||    c
                 cgcucguuu  GCAUCGCCC CAG  GC GAGAcuu     cgg      cgac    a
-----cgucgucucuac         ac         U   -U  A       -----   ----uc    ucuu 


Annotation confidence Not enough data
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Genome context
Chr1: 7778986-7779123 [+]

Database links

Mature lja-miR7516-5p

Accession MIMAT0029328
Description Lotus japonicus lja-miR7516-5p mature miRNA
Sequence 31 - UAGCGGGUGUCUUCGCCUCUGA - 52
Evidence experimental
cloned [1], Northern [1]

Mature lja-miR7516-3p

Accession MIMAT0029329
Description Lotus japonicus lja-miR7516-3p mature miRNA
Sequence 95 - AGAGACGUGACUCCCGCUACG - 115
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154