miRBase entry: lja-MIR7526a

Stem-loop lja-MIR7526a


Accession
MI0024401
Description
Lotus japonicus lja-MIR7526a precursor miRNA
Gene family
MIPF0001651; MIR7526


Sequence

guagcgguaacuaccgcaauuaaaauagcuguaacguccgcuAUCAAGGUAGCUGUAACUUCCgcuauuaagauaacaguuacagcuaucuugauagcggaaguuacagcuaucuugauagcggaaguuaccgcuaucuugacugcgguaguuaccgcuau
((((((((((((((((((.((((.(((((.(((((.(((((((((((((((((((((((((((((((((((((((.(.......).))))))))))))))))))))))))))))))))))))))).))))).))))).)))).))))))))))))))))))

Structure
                  a    a     u     g                                       a ag 
guagcgguaacuaccgca uuaa auagc guaac uccgcuAUCAAGGUAGCUGUAACUUCCgcuauuaagaua c  u
|||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |  u
uaucgccauugauggcgu aguu uaucg cauug aggcgauaguucuaucgacauugaaggcgauaguucuau g  a
                  c    c     c     a                                       c ac 


Annotation confidence Not enough data
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Genome context
Chr1: 5373726-5373886 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR7526a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR7526a

Accession MIMAT0029342
Description Lotus japonicus lja-miR7526a mature miRNA
Sequence 43 - AUCAAGGUAGCUGUAACUUCC - 63
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154