miRBase entry: lja-MIR7533a

Stem-loop lja-MIR7533a


Accession
MI0024416
Description
Lotus japonicus lja-MIR7533a precursor miRNA
Gene family
MIPF0001834; MIR7533


Sequence

uuuggauccucuccaucgagcuucucuccauccucucuccauccaaaucugagccauugauuuggaaacuuaaaggcuuggauacauuuaagaagagagagaaaaaaugaauuguauuuaaaggcuugaauuaauuuaagaagagagagaaaacaugaacuaauccucaccuuuaaaauucaaaaucaauggcucagauuuuggauggaGAGGGGAUGGAGAGAAGCUGGauggagaggauccaaa
.((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((.(((..(((((((.(((((((((..........................)))))))))...((((((....))))))..(((.((...............))))).)))))))..))).)))))))))))))))).))))))))))))))))))))))))))))).)))))))))))))))).

Structure
u                g                             -                g   ac       -----------------------------------------------c         uuuaagaagaga 
 uuggauccucuccauc agcuucucuccauccucucuccauccaaa ucugagccauugauuu gaa  uuaaagg                                                uuggauaca            g
 |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||  |||||||                                                |||||||||             
 aaccuaggagagguaG UCGAAGAGAGGUAGGGGAGagguagguuu agacucgguaacuaaa cuu  aauuucc                                                aauuuaugu            a
a                G                             u                a   aa       acuccuaaucaaguacaaaagagagagaagaauuuaauuaaguucgga         uaaguaaaaaag 


Annotation confidence Not enough data
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Genome context
Chr4: 2224800-2225045 [+]

Database links

Mature lja-miR7533a

Accession MIMAT0029357
Description Lotus japonicus lja-miR7533a mature miRNA
Sequence 210 - GAGGGGAUGGAGAGAAGCUGG - 230
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154