Stem-loop lja-MIR7540a

Accession

MI0024425

Description

Lotus japonicus lja-MIR7540a precursor miRNA

Gene family

MIPF0001846; MIR7540

Sequence

gaagaaggaagagagaaaugaaUGAUAUGAUAAGUGAUGUGAcagaaauugcagggagagauaagaagaagauaaaguggaaaugagauggaagagaaauagaagugugaaugaauuauuacuaaauuuauucauacuuuaaacuuuuucgaguucauuuccacuuuaauuucauuucuaccuaucuccuuauuuccuauuauaucauauaucacaucucauacuuuaucucucucuucuuauuuc
((((.(((((((((((.((((((((..(((((.(((((((((..(((((...(((((((....((((((((.(((((((((((((((.((((((((.....((((((((((((((((.......))))))))))))))))...))))))))..))))))))))))))).))))..)))).....))))))))))))...))))))))).)))))....))))...)))).))))))))))).))))

Structure

    a           a    ---    --UA     A         -ca     ugc       -gaua    --    a               -a        aaaua                au 
gaag aggaagagaga auga   aUGA    UGAUA GUGAUGUGA   gaaau   agggaga     agaa  gaag uaaaguggaaaugag  uggaagag     gaagugugaaugaauu  u
|||| ||||||||||| ||||   ||||    ||||| |||||||||   |||||   |||||||     ||||  |||| |||||||||||||||  ||||||||     ||||||||||||||||  a
cuuu uucuucucucu uauu   uacu    acuau uacuauauu   cuuua   uuccucu     ucuu  cuuu auuucaccuuuacuu  gcuuuuuc     uuucauacuuauuuaa  c
    a           c    uca    cuac     a         auc     ---       aucca    ua    a               ga        --aaa                au 

Annotation confidence Not enough data

Genome context

Chr4: 19595902-19596147 [-]

Mature lja-miR7540a

• Accession: MIMAT0029366
• Description: Lotus japonicus lja-miR7540a mature miRNA
• Sequence: 23 - UGAUAUGAUAAGUGAUGUGA - 42
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154