miRBase entry: lja-MIR7541

Stem-loop lja-MIR7541


Accession
MI0024427
Description
Lotus japonicus lja-MIR7541 precursor miRNA


Sequence

cauaaaauuauauaacauguugguuugaugcauaggaaauaggcuacgagcaaugugacuagggguggaaauaggucgagccgagccaagcuuuguguggccuaggccuggccUGCAUUCUCUUUUGGUGGCCCaagccuggccuguggccuaucaauagaccaaauuuuaug
(((((((((...........(((((((.((.(((((..((((((((.(.((...((.((((((((.(((..(((((((.(((..((((.((...)).))))...))).)))))))..))).)))))))).))....)))))))))))..))))))).))))))))))))))))

Structure
         auauaacaugu       a  c     aa        c a  -aau  g        u   aa       a   -ga    a  u 
cauaaaauu           ugguuug ug auagg  auaggcua g gc    gu acuagggg gga  uaggucg gcc   gcca gc  
|||||||||           ||||||| || |||||  |||||||| | ||    || |||||||| |||  ||||||| |||   |||| || u
guauuuuaa           accagau ac uaucc  uguccggu c cg    CG UGGUUUUC CUU  GUccggu cgg   cggu ug  
         -----------       a  -     gg        - -  aaCC  G        U   AC       c   auc    g  u 


Annotation confidence Not enough data
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Genome context
Chr1: 42871953-42872125 [-]

Database links

Mature lja-miR7541

Accession MIMAT0029368
Description Lotus japonicus lja-miR7541 mature miRNA
Sequence 114 - UGCAUUCUCUUUUGGUGGCCC - 134
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154