miRBase entry: ipu-let-7e-1

Stem-loop ipu-let-7e-1


Accession
MI0024447
Description
Ictalurus punctatus ipu-let-7e-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention ipu-let-7e-1
(5 sentences)

Sequence

UGAGGUAGUAGAUUGAAUAGUUguggagcccugcgcucucucucugagauaacuauacaaucuacugucuuuc
.((((((((((((((.(((((((((((((.....)))))(((...))))))))))).))))))))))))))..

Structure
-U              A        ---------     c 
  GAGGUAGUAGAUUG AUAGUUgu         ggagc c
  |||||||||||||| ||||||||         ||||| u
  uucugucaucuaac uaucaaua         ucucg g
cu              a        gagucucuc     c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-let-7e

Accession MIMAT0029378
Description Ictalurus punctatus ipu-let-7e mature miRNA
Sequence 1 - UGAGGUAGUAGAUUGAAUAGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174